Extracting Core Bacterial Genome From Mugsy Alignment
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9.2 years ago
musta1234 ▴ 30

I recently aligned 60+ 2.2Mb Neisseria genomes using mugsy and need to extract alignment blocks (LCBs) shared by all genomes. Can anyone suggest the best way to get that from a .maf file?

alignment maf • 2.8k views
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9.2 years ago
biotech ▴ 560

I'm in the same boat.

Bernardo

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