I am trying to install the SMRTanalysis tool-kit from pacbio and wish to do this on a single machine. The documentation claims that this is possible and I see a directory ./analysis/etc/cluster/BASH.
The automated set-up script does not allow this option and I am unclear on which files to edit to make this work. Has anyone managed this or can point me to the relevant documentation?
EDIT: In the set-up script I selected SGE, entered a non-existent queue then deleted files referred to in the documentatoin This got the portal to work and the demo job to run. I'm still unsure if that is all I need to do but I guess I will find out when our new pacbio data starts to arrive.