Working With Human Genome Assembly
1
0
Entering edit mode
8.8 years ago
farnoosh ▴ 30

Hi, I am currently new to the field of bioinformatics. I want to work on Human Genome Assembly GRCh37 on the linke below:

http://www.ncbi.nlm.nih.gov/projects/genome/assembly/grc/human/

but, I don't know which part should be downloaded as the data. should I download one of these links: GRCh37 (latest major release): FTP GRCh37 Patch Release 13 (latest minor release): FTP Information on regions under review: FTP Annotated clone assembly problems: FTP

or I should get each chromosome in the link : http://www.ncbi.nlm.nih.gov/assembly/GCF_000001405.25/

Which one is correct?

Thanks

human fasta genbank • 2.2k views
ADD COMMENT
0
Entering edit mode
8.8 years ago

IMHO, you should download the version packaged in the GATK bundle ( http://gatkforums.broadinstitute.org/discussion/1213/what-s-in-the-resource-bundle-and-how-can-i-get-it ) because all your downstream analysis will compatible with the GATK pipeline http://www.broadinstitute.org/gatk/guide/topic?name=best-practices

ADD COMMENT

Login before adding your answer.

Traffic: 1317 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6