Closed:How To Get Probeset_Id From A Genefeatureset Object In R
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10.7 years ago
munch ▴ 310

I want to analyse GE data at probe level. From the .CEL files I create with read.celfiles() a GeneFeatureSet object (oligoClasses). With exprs() I get the raw expression data. My question is: How I can get probeset_id (e.g 7896739) from this GeneFeatureSet, to map this to my annotation file?

The function featureNames() from Biobase creates a character vector starting with 1, which doesn't look like the 7-digit long probeset_id.

Thank you

affymetrix probeset • 355 views
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