Question: (Closed) Best Way To Grab All Ncbi Protein Sequences For A Specific Taxonomic Query?
0
gravatar for JacobS
5.3 years ago by
JacobS890
Cleveland, Ohio
JacobS890 wrote:

I would like to retrieve all of the NCBI protein sequences that belong to a specific taxonomic query, or children of that query. For example, I want to get every protein sequence belonging to the family 'Elephantidae' that is on NCBI.

I'm a bit frustrated, because I can easily use the taxonomic browser to get to the family Elephantidae, but now I want to download all sequences belonging to this family, but can't seem to figure out how.

All suggestions welcome!

ncbi taxonomy blast • 2.6k views
ADD COMMENTlink written 5.3 years ago by JacobS890

duplicate of

How to retrieve all sequences, from NCBI, that belong to a specific txid AND its sub txids?

ADD REPLYlink written 5.3 years ago by Pierre Lindenbaum114k

Good call, thanks for pointing that out... found my answer there.

ADD REPLYlink written 5.3 years ago by JacobS890

Good, we should close this as a duplicate then. Just tried but got the message about having to comment first, although I had written the comment...

ADD REPLYlink written 5.3 years ago by Neilfws48k
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