Question: Database/Articles For Gene Expression After Transcription Factor Perturbation
gravatar for Michael Schubert
7.5 years ago by
Cambridge, UK
Michael Schubert7.0k wrote:

Do you know of any databases or research articles that measure changes in gene expression following an si- or sh-RNA perturbation on transcription factors?

One source I could find is Fantom4, where 52 transcription factors were knocked down in the THP-1 cell line and expression was measured afterwards. This is, however, only one cell line.

Another approach could be to search GEO/ArrayExpress for the keywords, but there were (a) surprisingly few results for a given well-known TF and (b) fantom4 data was for instance not deposited there.

ADD COMMENTlink modified 7.1 years ago by Biostar ♦♦ 20 • written 7.5 years ago by Michael Schubert7.0k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2412 users visited in the last hour