I have a local database of miRNA::gene interactions for hsa, which contains just "GeneID" (Entrez ID) and "Gene Name" for Genes. I want to extract gene sequences for my genes either with the name or with the ID.
I have two different ideas:
1)I thought about finding a complete downloadable database of human genes, containing id,name and whole sequence of the genes! which I could not find!
2)using bioperl (or other similar stuff) and Bio::DB::EntrezGene to extract the gene sequences but it seems that "Bio::DB::EntrezGene" is broken : http://stackoverflow.com/questions/16199037/bioperl-module-biodbentrezgene-no-longer-working
what do you suggest dudes? I am really confused!!!