News: Next-Gen Sequencing Tutorials On Cubelp (Cranfield Bioinformatics Electronic Learning Platform)
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gravatar for rob234king
4.0 years ago by
rob234king530
UK/Harpenden/Rothamsted Research
rob234king530 wrote:

A website with tutorial case studies for ChIP-Seq, RNA-Seq, SNP calling, genome assembly. Please comment on this thread for feedback and suggested improvements.

http://elvis.misc.cranfield.ac.uk/CUBELP2/

snp chip-seq news assembly genome • 2.1k views
ADD COMMENTlink modified 5 months ago by hegazy5530 • written 4.0 years ago by rob234king530
2

Good to see you've removed the login requirement. I also prefer the tab based browsing of the tutorials to the long (and rather plain looking) PDF files.

One thing I'd like to suggest though, it that where you show an example of a SAM file, it would be best to indicate the fields are delimited by tabs. On my browser (I'm not sure whether this is intentional or not), they are separated by pipes.

ADD REPLYlink modified 4.0 years ago • written 4.0 years ago by BruceB280

A number of student are submitting to this server over the next month which is resulting in permgen errors, some kind of memory leak somewhere or due to multiple submissions. Issue corrected for the moment.

ADD REPLYlink modified 4.0 years ago • written 4.0 years ago by rob234king530

Excellent approach, it will be helpful for everyone. But a little request if there is some discussion page then it will be more attractive.....wish you all the best

ADD REPLYlink written 4.0 years ago by HG970
0
gravatar for rob234king
4.0 years ago by
rob234king530
UK/Harpenden/Rothamsted Research
rob234king530 wrote:

Error on how velvet shuffled using .fasta shuffle perl program rather than .fastq thus the velvet assemblies are going to be much worst than are achievable, although SOAP2 and AllPaths-LG would still be better. I'll update this before October to correct. Any other improvements etc would be welcome. I may add how to microarray analysis but it is well documented elsewhere.

ADD COMMENTlink modified 4.0 years ago • written 4.0 years ago by rob234king530
0
gravatar for garimav89
24 months ago by
garimav890
garimav890 wrote:

Will these tutorials be helpful for beginners in bioinformatics?

 

ADD COMMENTlink written 24 months ago by garimav890

They should be, depending on what you want to learn.

ADD REPLYlink written 23 months ago by rob234king530
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