News:Next-Gen Sequencing Tutorials On Cubelp (Cranfield Bioinformatics Electronic Learning Platform)
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9.1 years ago
rob234king ▴ 610

A website with tutorial case studies for ChIP-Seq, RNA-Seq, SNP calling, genome assembly. Please comment on this thread for feedback and suggested improvements.

http://elvis.misc.cranfield.ac.uk/CUBELP2/

snp genome assembly chip-seq News • 3.5k views
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Good to see you've removed the login requirement. I also prefer the tab based browsing of the tutorials to the long (and rather plain looking) PDF files.

One thing I'd like to suggest though, it that where you show an example of a SAM file, it would be best to indicate the fields are delimited by tabs. On my browser (I'm not sure whether this is intentional or not), they are separated by pipes.

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A number of student are submitting to this server over the next month which is resulting in permgen errors, some kind of memory leak somewhere or due to multiple submissions. Issue corrected for the moment.

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Excellent approach, it will be helpful for everyone. But a little request if there is some discussion page then it will be more attractive.....wish you all the best

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9.1 years ago
rob234king ▴ 610

Error on how velvet shuffled using .fasta shuffle perl program rather than .fastq thus the velvet assemblies are going to be much worst than are achievable, although SOAP2 and AllPaths-LG would still be better. I'll update this before October to correct. Any other improvements etc would be welcome. I may add how to microarray analysis but it is well documented elsewhere.

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7.1 years ago
garimav89 • 0

Will these tutorials be helpful for beginners in bioinformatics?

 

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They should be, depending on what you want to learn.

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