A website with tutorial case studies for ChIP-Seq, RNA-Seq, SNP calling, genome assembly. Please comment on this thread for feedback and suggested improvements.
Error on how velvet shuffled using .fasta shuffle perl program rather than .fastq thus the velvet assemblies are going to be much worst than are achievable, although SOAP2 and AllPaths-LG would still be better. I'll update this before October to correct. Any other improvements etc would be welcome. I may add how to microarray analysis but it is well documented elsewhere.