Question: Iterative Mapping And Assembly For Gap Elimination (Images)
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gravatar for HG
7.2 years ago by
HG1.1k
Germany
HG1.1k wrote:

Hi everyone i finished listeria genome assembly with Spades, after that i used ABACAS for scaffolding and ordering of the contig but i have few gap after scaffolding. Now i want to fill gap in insilico method do anyone suggest which will be best methods to fill the gap?? i already tried with IMAGES, but i did not get any suitable manual for this also. Please help me out Thanks all.

• 2.6k views
ADD COMMENTlink modified 7.2 years ago by cts1.6k • written 7.2 years ago by HG1.1k
0
gravatar for cts
7.2 years ago by
cts1.6k
Pasadena
cts1.6k wrote:

You could try out GapFiller or GapCloser which is part of SOAPdenovo

ADD COMMENTlink written 7.2 years ago by cts1.6k

Is GapFiller a free software ???

ADD REPLYlink written 7.2 years ago by HG1.1k

It's "free as in beer". You do annoyingly have to give them your email address and name.

ADD REPLYlink written 7.2 years ago by cts1.6k

could you please suggest me how to use it i already tried according to manual but failed ......please help me out

ADD REPLYlink written 7.2 years ago by HG1.1k
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