Question: How To Obtain The Nucleotide Sequences Instead Of Amino Acid From The Getorf Output Of Emboss
0
gravatar for figo
6.1 years ago by
figo200
figo200 wrote:

Hi All

I was running the getorf on nucleotide sequences to find the ORF. In the output I get the amino acid sequences of the ORF. Can any one tell me how I can fetch the nucleotide sequences instead of amino acid for ORF as output.

Best regards

• 2.7k views
ADD COMMENTlink modified 6.1 years ago by Damian Kao15k • written 6.1 years ago by figo200
4
gravatar for Damian Kao
6.1 years ago by
Damian Kao15k
USA
Damian Kao15k wrote:

The -find parameter lets you choose nucleotide or protein output. Default is 0. Here are the possible options:

  0 (Translation of regions between STOP codons)
  1 (Translation of regions between START and STOP codons)
  2 (Nucleic sequences between STOP codons
  3 (Nucleic sequences between START and STOP codons)
  4 (Nucleotides flanking START codons)
  5 (Nucleotides flanking initial STOP codons)
  6 (Nucleotides flanking ending STOP codons))
ADD COMMENTlink written 6.1 years ago by Damian Kao15k

thanks ... I think didn't see the options correctly .

ADD REPLYlink written 6.1 years ago by figo200
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1633 users visited in the last hour