Question: (Closed) Downloading Complete List Of Rs Snp Positions From Dbsnp
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gravatar for max
5.6 years ago by
max10
max10 wrote:

I have been trying to figure out how to obtain a complete list of known rs SNPs for the human genome along with their chromosome coordinates as a flatfile from dBSNP. The closest that I could find is an option to email a file with this information for up to 30K specified SNPs. I need a complete list of SNP loci and their coordinates - how do I go about finding/downloading this from dbSNP?

http://www.ncbi.nlm.nih.gov/projects/SNP/

dbsnp • 12k views
ADD COMMENTlink modified 2.9 years ago by Biostar ♦♦ 20 • written 5.6 years ago by max10

exact duplicate of

List of dbSNP rsids and their positions

ADD REPLYlink written 5.6 years ago by Pierre Lindenbaum118k

OK thanks. I guess dbSNP site doesn't have a direct link, though I did find FASTA files for individual chromosomes.

ADD REPLYlink written 5.6 years ago by max10

you can also use the NCBI VCF files : http://www.ncbi.nlm.nih.gov/variation/docs/human_variation_vcf/

ADD REPLYlink written 5.6 years ago by Pierre Lindenbaum118k

Hello max!

Questions similar to yours can already be found at:

We have closed your question to allow us to keep similar content in the same thread.

If you disagree with this please tell us why in a reply below. We'll be happy to talk about it.

Cheers!

ADD REPLYlink written 21 months ago by Michael Dondrup45k
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