Question: Which Software Can Be Used To Build Nj Tree With Gtr+I+G Model?
0
gravatar for Cacau
4.9 years ago by
Cacau410
Canada
Cacau410 wrote:

I found MEGA and Phylip do nbot work for GTR+I+G for NJ trees. Which software can be used? Thanks!

phylogeny tree • 2.2k views
ADD COMMENTlink modified 4.8 years ago by Joseph Hughes2.6k • written 4.9 years ago by Cacau410
1
gravatar for Joseph Hughes
4.8 years ago by
Joseph Hughes2.6k
Scotland, UK
Joseph Hughes2.6k wrote:

You can use PAUP. After opening your nexus file, something like this should do the trick:

dset distance=GTR basefreq=empirical rates=gamma  shape=real_value pinv=real_value
nj brlens = yes treefile= treename.tre

Where you specify the shape and the pinv values.

ADD COMMENTlink written 4.8 years ago by Joseph Hughes2.6k
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