How Can I Visualize Sashimi Plots In Igv Genome Browser ?
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8.8 years ago
samsara ▴ 630

IGV 2.3.10 has incorporated Sashimi plots for RNA-Seq alignments. I have been using MISO and Sashimi plots when Sashimi plots has not been incorporated in IGV. Since the plot feature is incorporated in IGV, I am interested visualizing RNA-Seq data in IGV. I did not find any information about visualizing them in IGV. It would be a great help if someone has done it and would like to share the idea to me. Thanks in advance.

So, my question is: How can i visualize sashimi plots in IGV Genome Borwser ?

rna-seq • 8.8k views
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3
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8.8 years ago

pretty simple. Go to the region you want to plot. Right-click, and click on sashimi plot

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2
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Since someone just asked me about this, please note that you need to right click on the track with the reads rather than the track with the coverage.

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Thanks a lot. I did not expect it to be this simple :D

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You're welcome ;)

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7 weeks ago
aimanbarki ▴ 20

Here is the tutorial for IGV and Sashimi plot

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