Soapdenovo .Kmerfreq File Error

Question

[mariekuh123]

Hi, I try to run SOAPdenovo on a linux server with the following command: ./SOAPdenovo all -s 2691.config -K 63 -R -o 2691

The contents of config file are: max_rd_len=150, [LIB], avg_ins=200, reverse_seq=0, asm_flags=3, rd_len_cutoff=100, map_len=32, q1=/path/file, q2=/path/file

When I run the command, the program reads the files and will make a pregraph, but then there is an error: Can't open *.kmerFreq

I can't find any solution on the internet, I have tried other parameters and other files but the error still appears.

Can somebody help me with this problem?

[SES]

Is there a *.kmerFreq file in the working directory after the program dies? If not, the program may be running out of memory trying to generate this data.

[Buttonwood]

Try to run it step by step. first pregraph, then contig, then map, then scaff.