Specific E Values In Blast Score
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13.4 years ago
Azam ▴ 60

I have e values in one column but I want to select specific e values less than 0.0003 in order to print the same column.

blast • 2.7k views
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I am afraid you will need to be a bit more specific to get any help. As it is now, the only thing I can advise, is to [sort|filter|...] your [spreadsheet|matrix|data.frame|...] by e-value...

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Not a very clear question. Do you mean that you want to print rows where the e-value column is < 0.0003 ?

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No, column contain lot of e values but i need only those which are less than <0.0003

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4
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13.4 years ago

With awk (if the e-value is in your 11th column in a tabular blast output):

awk '$11 < 1e-5 { print $0}' myresult.blast

Emmanuel

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