Question: Resources For Ngs?
2
gravatar for enricoferrero
5.5 years ago by
enricoferrero760
United Kingdom
enricoferrero760 wrote:

Can anybody please suggest some good resources (guides, tutorials, online courses, books...) for NGS pipelines and workflows? I'm interested in both RNA-seq and ChIP-seq but, given the huge number of tools available and steps involved, I don't really know where to start.

Bonus points if it's R/Bioconductor, but I'm mostly looking for a "golden standard" of NGS data processing and analysis.

Thank you!

ngs chip-seq rna-seq sequencing • 2.5k views
ADD COMMENTlink modified 5.5 years ago by Konrad690 • written 5.5 years ago by enricoferrero760
3
gravatar for Zev.Kronenberg
5.5 years ago by
United States
Zev.Kronenberg11k wrote:

Just one of many good resources:

http://www.bioconductor.org/packages/2.12/data/experiment/html/RnaSeqTutorial.html

ADD COMMENTlink written 5.5 years ago by Zev.Kronenberg11k

Thanks, I didn't find it myself. Shame is a bit out of date.

ADD REPLYlink written 5.5 years ago by enricoferrero760
2
gravatar for Vivek
5.5 years ago by
Vivek2.2k
Denmark
Vivek2.2k wrote:

When I did RNA-seq for the first time, this tutorial was pretty helpful.

http://vallandingham.me/RNA_seq_differential_expression.html

ADD COMMENTlink written 5.5 years ago by Vivek2.2k

Nice one, thanks!

ADD REPLYlink written 5.5 years ago by enricoferrero760
1
gravatar for Konrad
5.5 years ago by
Konrad690
Germany
Konrad690 wrote:

Maybe the NGS WikiBook is be useful for you. There is a recent publication about it.

ADD COMMENTlink written 5.5 years ago by Konrad690

Thanks, this really looks like what I'm looking for. Looking forward to see it completed.

ADD REPLYlink written 5.5 years ago by enricoferrero760
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1371 users visited in the last hour