Resources For Ngs?

Question

[enricoferrero]

Can anybody please suggest some good resources (guides, tutorials, online courses, books...) for NGS pipelines and workflows? I'm interested in both RNA-seq and ChIP-seq but, given the huge number of tools available and steps involved, I don't really know where to start.

Bonus points if it's R/Bioconductor, but I'm mostly looking for a "golden standard" of NGS data processing and analysis.

Thank you!

Answer 1

[Zev.Kronenberg]

Just one of many good resources:

http://www.bioconductor.org/packages/2.12/data/experiment/html/RnaSeqTutorial.html

[enricoferrero]

Thanks, I didn't find it myself. Shame is a bit out of date.

Answer 2

[Vivek]

When I did RNA-seq for the first time, this tutorial was pretty helpful.

http://vallandingham.me/RNA_seq_differential_expression.html

[enricoferrero]

Nice one, thanks!

Answer 3

[Konrad]

Maybe the NGS WikiBook is be useful for you. There is a recent publication about it.

[enricoferrero]

Thanks, this really looks like what I'm looking for. Looking forward to see it completed.