Question: Mapping Applications On Hadoop Cluster
1
gravatar for bashwin.u
7.0 years ago by
bashwin.u40
bashwin.u40 wrote:

Hello,

I would like to know if there are any new mapping applications for paired end data designed to work on hadoop cluster. The mapping applications that i know are CloudBurst (single ended), Crossbow and DistMap.

PS: I dont have a background in Bioinformatics. I am an IT student working on Hadoop infrastructure to assess its performance for an organization.

Thanks

genome paired-end mapping • 1.6k views
ADD COMMENTlink modified 7.0 years ago by Chris Whelan550 • written 7.0 years ago by bashwin.u40
1

This blog could be a good source for you

ADD REPLYlink written 7.0 years ago by Sudeep1.6k
2
gravatar for Chris Whelan
7.0 years ago by
Chris Whelan550
Portland, OR
Chris Whelan550 wrote:

You could also look at SEAL:

http://biodoop-seal.sourceforge.net/

My structural variation detection too, Cloudburst, also has commands to parallelize mappings in Hadoop:

https://github.com/cwhelan/cloudbreak

ADD COMMENTlink written 7.0 years ago by Chris Whelan550
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