Newbie here. I am interested plotting gene densities from my RNAseq data. I have a file with chromosome locations and read numbers for each gene. I want to plot each chromosome and get a bar graph with each bar indicating the number of genes present in 1MB bins. I guess I can count the number of genes in each 1MB region but I feel like there might be an R package out there that I'm not aware of. I'm planing to use qplot for the plotting. Any suggestions?
Thanks a lot!