Can some one help me in knowing algorithms for converting gVCF file for VCF file. As per https://sites.google.com/site/gvcftools/home/about-gvcf website, it can be done by removing non-vraiants regions from gVCF files but I am just wondering how to accomplish it means how to remove this ? Where to get coordinates for NON Variants region . I can write the scripts if once I know about how to accomplish it.
You could whip up a script for either of these functions, but the gvcftools utilities can be faster/more convenient if you're dealing with a large number of samples. The code is also MIT licensed on github so you're welcome to fork and customize.