How To Get Genotypes From 1000 Genomes Data

Question

[daviderix]

Hi everyone, could anyone suggest me a way to download from 1000 genomes the genotypes of a set of SNPs (for example the ones with MAF>0.05 on a certain gene) belonging to a certain population? In addition, is there a way to extract these data in a PLINK format? I would really appreciate any help. Thank you very much indeed.

Answer 1

[matted]

The 1000 Genomes FAQ has answers and relevant links for your questions:

• Can I get genotypes for a specific individual/population from your vcf files?
• How do I get a sub-section of a vcf file?
• Can I convert vcf files to plink/ped format?