Entering edit mode
10.6 years ago
Biojl
★
1.7k
Hi,
I'm trying to run trinity and I'm getting the error:
...
which: no bowtie in (/home/josepl/Desktop/software/Version_8.97_101117/bin:/usr/lib64/qt-3.3/bin:/usr/kerberos/sbin:/usr/kerberos/bin:/usr/lib64/ccache:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/soft/bio/sequence/mafft-6.857/bin:/soft/bio/sequence/bowtie2-2.1.0/:/soft/bio/sequence/samtools-0.1.7a/:/soft/bio/sequence/tophat-2.0.8/bin/tophat:/home/josepl/bin)
...
I have the path exported. Presumably the error appears because he is looking for Bowtie and I have installed Bowtie2. Anyone knows if there is an option to tell trinity to use bowtie2?
Thanks
