Overlap Between Array And Vcf

Question

[win]

Hi all, Hope someone can help. I have a tab delimited file of microarray data and a VCF file of the same sample. I want to find out how the overlap between the microarray data and vcf data. Both have dbSNP id. I could do this via database techniques but I wanted to know if there was a way to accomplish this using another tool?

thanks in advance.

Answer 1

[Pierre Lindenbaum]

use comm or join http://linuxaria.com/howto/uniq-comm-and-join-3-linux-command-for-the-cli?lang=en