How Can I Fetch Exon-Exon Junction Sequnce For Genes Found Using Galaxy?

Question

[laceym294]

Hello there,

I'm trying to fetch sequence for Exon-Exon junctions for a specific set of genes found using Galaxy: specifically I'm looking for a way to fetch 30bp of sequence into the exons on each side. The data I have is standard BED format (Chromosome, start and stop positions, strand etc).

I've come rather unstuck and appreciate the help!