Entering edit mode
10.5 years ago
clpratsb
•
0
Hello!
I am trying to use the epistasis command for a Quantitative trait, but I don't understand the ouput. One example is:
CHR SNP N_SIG N_TOT PROP BEST_CHISQ BEST_CHR BEST_SNP 0 SNP1 0 11 0 4.449 6 SNP
so I am confused because it says BEST_CHIQ and It doesn't appear the BETAvalue even if it is an interaction, why? and How can I get it?
moreover, my command is: --assoc --ci 0.95 --epistasis --set-test --set file.set --set-by-all --mperm 1000
Thank you very much :)
