Salmonella Annotation For Rna-Seq Analysis
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10.7 years ago
robjohn7000 ▴ 110

Hi,

Does anyone know where I can find annotation for Salmonella enterica SL13144 (required for mapping RNA-Seq reads)? I have looked for a GFF (ensembl) and also checked UCSC without any success.

Thanks.

gene rna-seq annotation • 2.7k views
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10.7 years ago
Konrad ▴ 710

I assume you mean the strain SL1344 (not SL13144). If so have a look at this:

ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Salmonella_enterica_serovar_Typhimurium_SL1344_uid86645/

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Yes, the only source for "SL13144" found via Google search is this question :)

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Apologies for spelling mistake. Yes, exactly what I wanted. Thanks a lot Konrad!

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