I have a bunch of rsIDs and I need to find the corresponding 1000 genomes MAF as provided in dbSNP: I have a set of IDs as input:
rs1751034 rs1799852 rs1799983 rs1800460 rs1801030
I am looking for server / service / database that can give me an output like
rs1751034 NA rs1799852 0.132 rs1799983 0.203 rs1800460 0.020 rs1801030 0.090
Google searches revealed several raw data-munging options:
I have tried several options including the following two suggestions: http://www.ncbi.nlm.nih.gov/books/NBK44431/#Search.Finding_Minor_Allele_Frequencies I downloaded the AlleleFreqBySsPop.bcp, but am not sure if this table provides the 1000 genomes MAF.
Also tried this option: http://seqanswers.com/forums/showthread.php?t=4910 Downloaded and checked for MAFs, but the allele frequencies are not concordant with the 1000 genomes MAF in dbSNP.
I just need this info only for a couple of SNPs, so looking for a simple search/retrieve option. Do you know how can I get this information ?
Thanks in advance !