Question: Gene Ontology Go Recall Calculation Tool
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gravatar for nevena.veljkovic
6.0 years ago by
nevena.veljkovic0 wrote:

I need to propagate a set of predicted GO terms to the root of the Gene Ontology Directed Acyclic Graph (DAG) and to calculate recall. Any recommendation for a tool free for academics?

bioinformatics prediction • 1.3k views
ADD COMMENTlink modified 5.9 years ago by Biostar ♦♦ 20 • written 6.0 years ago by nevena.veljkovic0

Do you mean you want the actual path the GO takes to reach the root?

ADD REPLYlink modified 6.0 years ago • written 6.0 years ago by Phil S.660

No, I didn’t mean that. I will try to be more specific: we predicted GO terms describing protein functions and then compare the predictions with the original functions defined by GO database. All the GO term nodes existing in the paths of the predicted GO terms toward the root are considered matches. The recall is defined as the fraction of matches between the annotated and the predicted functions among the original function annotations.

ADD REPLYlink written 6.0 years ago by nevena.veljkovic0
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