.Xyz To .Pdb Conversion
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7.9 years ago

Hi How can I convert .xyz file format to .pdb (protein data bank) file format? Is there easy way to convert? I tried with open babel in windows but I think there was something missing in my file (missing atoms) so that it didn't take that as an input. I am using windows machine! Thanks!javascript: document.forms["mainform"].submit()

coordinates pdb conversion • 16k views
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I use pymol for it.

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7.9 years ago
PoGibas 4.9k

Molecular formats converter (online) - "Converts molecules from one file format to another. Supports almost all existing formats."

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Thanks Pgibas. But it didn't work for me. I don't know why but I tried it several times but nothing came. As I uploaded the input file and choose the output forma and then again clicked the convert button but still.....didn't get anything..

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Isn't this your input file problem: "I think there was something missing in my file"?

Check this : .xyz example , does your file look the same? This example works with converter.
Edit.: Try not to upload an input file, but to paste it in.

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well, I figured it out. Thanks a lot for the help. I really appreciate. cheers1

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Happy to hear that! PS.: Change question title into something like: "xyz to pdb conversion".

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7.9 years ago

I think you can use obabel command => obabel filename.mol -O filename.pdb try to install open babel in Linux