Question: .Xyz To .Pdb Conversion
0
gravatar for spandankeshav
7.0 years ago by
Finland
spandankeshav80 wrote:

Hi How can I convert .xyz file format to .pdb (protein data bank) file format? Is there easy way to convert? I tried with open babel in windows but I think there was something missing in my file (missing atoms) so that it didn't take that as an input. I am using windows machine! Thanks!javascript: document.forms["mainform"].submit()

pdb coordinates conversion • 14k views
ADD COMMENTlink modified 7.0 years ago • written 7.0 years ago by spandankeshav80

I use pymol for it.

ADD REPLYlink written 6.9 years ago by Pappu1.9k
2
gravatar for PoGibas
7.0 years ago by
PoGibas4.8k
Vilnius
PoGibas4.8k wrote:

Molecular formats converter (online) - "Converts molecules from one file format to another. Supports almost all existing formats."

ADD COMMENTlink modified 7.0 years ago • written 7.0 years ago by PoGibas4.8k

Thanks Pgibas. But it didn't work for me. I don't know why but I tried it several times but nothing came. As I uploaded the input file and choose the output forma and then again clicked the convert button but still.....didn't get anything..

ADD REPLYlink written 7.0 years ago by spandankeshav80
1

Isn't this your input file problem: "I think there was something missing in my file"?

Check this : .xyz example , does your file look the same? This example works with converter.
Edit.: Try not to upload an input file, but to paste it in.

ADD REPLYlink modified 7.0 years ago • written 7.0 years ago by PoGibas4.8k

well, I figured it out. Thanks a lot for the help. I really appreciate. cheers1

ADD REPLYlink written 7.0 years ago by spandankeshav80

Happy to hear that! PS.: Change question title into something like: "xyz to pdb conversion".

ADD REPLYlink modified 7.0 years ago • written 7.0 years ago by PoGibas4.8k
0
gravatar for aswathy.paul91
7.0 years ago by
aswathy.paul910 wrote:

I think you can use obabel command => obabel filename.mol -O filename.pdb try to install open babel in Linux

ADD COMMENTlink written 7.0 years ago by aswathy.paul910
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