I was given a list of loci of interest for a particular gene, which contain mutations: unfortunately, all the information are using local base coordinates, while I'm in need to retranslate them to genomic coordinates to perform some additional work in preparation for validation. I've seen a few example of genomic -> local coordinate transformation, but not the opposite.
Bear in mind that I have access to the whole annotation of the genome (Homo sapiens), so using additional files and/or resources wouldn't be a problem.
Is there a way to convert from local coordinates to genomic coordinates? Python or R solutions would be preferred.