Looking For A Database Containing Outputs Of Clip-Seq Experiments
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8.2 years ago

Hello everyone, I am currently doing some bibliographic research on rna binding structural motifs, and I can't find any database containing outputs of CLIP experiments (excluding miRNA data if possible), that is, rna sequences that bind with which RBP. Does any of you know something?

Thanks

motif rna • 3.2k views
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8.2 years ago
lsp03yjh ▴ 810

you can try starBase. starBase integrated 111 CLIP-Seq datasets to provide various RNA-RNA and protien-RNA regulatory interactions. You can download all the RBP binding peaks from the download page.

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8.2 years ago
Mary 11k

I just happened to be looking at this handy *Seq list. There are a couple of papers there but I don't have access, so I don't know if they found a database home. You could see if those were cited by others too, perhaps.

http://liorpachter.wordpress.com/seq/

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