I have installed NCBI-Blast-2.2.28 on win-7.
Also set the path variable to bin directory. I want my protein fasta file to be used as database. against protein query with few sequences. (all vs all).
Upon following commands:
blastdbcmd -db my_db.fasta -outfmt "%f" -out query.fasta.txt blastp -query query.fasta -db my_db.fasta -out output.txt
Error: No alias or index file found for protein database
(files are present in folder specified).
Where I might have gone wrong?