Entering edit mode
10.4 years ago
serpalma.v
▴
80
Hello everyone, i was wondering if there's a way to filter fastq reads based on minimun and maximun length. Plus trimming at minimun quality value.
this is the closest i've came out with:
fastq_quality_trimmer -v -t 20 -l 16 -i myfile.fastq -o myfile.trimmed -Q 33
however, no option to choose the maximun length appears to exists. Is it possible that there are hidden commands that i don't know about (such as -Q 33). According to a technical note from ion torrent, there is an option to limit the maximimun length and it's contained in fastq_quality_trimmer.
I would greatly appretiate the help, Best regards!
cross posted on SE: http://seqanswers.com/forums/showthread.php?t=35983
is that a bad thing, sorry I am not familiar with forum's rules and regulations. Best
Those of us on both sites kind of hate it. Inevitably, a question will get answered on both sites, which just means that someone wasted their time.
Can be, however that's not everybody. And based on this post, i've gotten different feedback from both sources.