Hello everyone, i was wondering if there's a way to filter fastq reads based on minimun and maximun length. Plus trimming at minimun quality value.
this is the closest i've came out with:
fastq_quality_trimmer -v -t 20 -l 16 -i myfile.fastq -o myfile.trimmed -Q 33
however, no option to choose the maximun length appears to exists. Is it possible that there are hidden commands that i don't know about (such as -Q 33). According to a technical note from ion torrent, there is an option to limit the maximimun length and it's contained in fastq_quality_trimmer.
I would greatly appretiate the help, Best regards!