I'm trying to compile bam-readcount on SUSE Linux (without root rights, this is our cluster). I seem to have a problem with Boost, I get a bunch of errors similar to this:
bamreadcount.cpp:(.text+0x32f4): undefined reference to `boost::program_options::options_description::m_default_line_length'
I assume the linking to Boost is not working. I have compiled Boost and setup environment variables for cmake for boost_root and the include dir. What am I missing?