Question: Ask A Question About How To Impute
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gravatar for xiaoyanyan97
4.6 years ago by
xiaoyanyan970 wrote:

Ihave a snp data,like: 479 11343 0 0 1 -9 G A A A A A A A A A A G 1509 11357 26308 1750 2 -9 A A A A A A A A A A 0 0
1435 11382 19340 20846 2 -9 G A A A A A A A G A 0 0 637 11428 0 0 2 -9 G A A A A A A A A A G G 639 11451 0 0 2 -9 A A G A A A 0 0 A A A G it is .ped

now,I have convert it like: 479 11343 0 0 1 -9 1 0 0 0 0 1 1509 11357 26308 1750 2 -9 0 0 0 0 0 NA 1435 11382 19340 20846 2 -9 1 0 0 0 1 NA 637 11428 0 0 2 -9 1 0 0 0 0 0 639 11451 0 0 2 -9 0 1 0 NA 0 1 with plink,it's formet is raw. I want impute it with plink or other software. then the missing genotype can fix. thank you!

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ADD COMMENTlink written 4.6 years ago by xiaoyanyan970

IMPUTE2

ADD REPLYlink written 4.6 years ago by zx87544.6k
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