Question: Error Using Mysql For Orthomcl
gravatar for yogi.bioinfo
6.3 years ago by
yogi.bioinfo10 wrote:

Hello all ,i am a student of bioinformatics ,using Orthomcl tool for my task , when i use the command

./orthomclLoadBlast my_orthomcl/orthomcl.config my_orthomcl/similarSequence.txt

it gives the error

Can't connect to data source ' :mysqllocalinfile=1'

because I can't work out what driver to use (it doesn't seem to contain a 'dbi:driver:' prefix and the DBI_DRIVER env var is not set) at /home/linux/Desktop/orthomclSoftware-v2.0.9/bin/../lib/perl/OrthoMCLEngine/Main/ line 56

DBI-perl is installed in my system then why it is giving this error? How to solve this error?

linux orthomcl mysql perl • 2.3k views
ADD COMMENTlink modified 4.4 years ago by sckinta550 • written 6.3 years ago by yogi.bioinfo10
gravatar for sckinta
4.4 years ago by
United States
sckinta550 wrote:

In your config file, make the setting dbConnectString=dbi:mysql:orthomcl:mysql_local_infile=1. Make sure there there underscore there

ADD COMMENTlink modified 4 months ago by RamRS26k • written 4.4 years ago by sckinta550
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