Question: Error Using Mysql For Orthomcl
0
gravatar for yogi.bioinfo
5.5 years ago by
yogi.bioinfo10
yogi.bioinfo10 wrote:

Hello all ,i am a student of bioinformatics ,using Orthomcl tool for my task , when i use the command

./orthomclLoadBlast my_orthomcl/orthomcl.config my_orthomcl/similarSequence.txt

it gives the error

Can't connect to data source ' :mysqllocalinfile=1'

because I can't work out what driver to use (it doesn't seem to contain a 'dbi:driver:' prefix and the DBI_DRIVER env var is not set) at /home/linux/Desktop/orthomclSoftware-v2.0.9/bin/../lib/perl/OrthoMCLEngine/Main/Base.pm line 56

DBI-perl is installed in my system then why it is giving this error? How to solve this error?

linux orthomcl mysql perl • 2.0k views
ADD COMMENTlink modified 3.6 years ago by sckinta510 • written 5.5 years ago by yogi.bioinfo10
0
gravatar for sckinta
3.6 years ago by
sckinta510
United States
sckinta510 wrote:

In your config file, make the setting 'dbConnectString=dbi:mysql:orthomcl:mysql_local_infile=1'. Make sure there there underscore there. 

ADD COMMENTlink written 3.6 years ago by sckinta510
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