Question: How About Starting A Tutorial For Chip Seq Data Analysis?
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gravatar for Dataminer
7.0 years ago by
Dataminer2.5k
Netherlands
Dataminer2.5k wrote:

Hi!

Dear all,

I was thinking it would be great, if we all (specially people working with ChIP seq data analysis) could write a small tutorial or a pipeline for ChIP seq data analysis, incorporating only the tools which are available on web.

This would immensely help in many ways, like knowledge base would be integrated and we all will learn from each others experience and moreover it will be of great help to any new comer.

Let me know what you all think of this idea?

next-gen chip-seq sequencing • 3.4k views
ADD COMMENTlink modified 3.2 years ago by Nowlan Freese820 • written 7.0 years ago by Dataminer2.5k
1

Would you consider contributing it to a bioinformatics Knowledgeblog? See http://biostar.stackexchange.com/questions/7680/what-kind-of-bioinformatics-tutorials-would-you-like-to-see-online

ADD REPLYlink written 7.0 years ago by Daniel Swan13k

I think this is a great idea. But, remember this is a Q/A site and not a discussion forum per se. There must be a wiki somewhere for exactly this. There is a ton of information in ChIP-seq analysis on seqanswers.com.

ADD REPLYlink written 7.0 years ago by Martin A Hansen3.0k

@Masha: Thank you for your comment, I know this is a question answer website and I intend to collect answers to few of the biological questions (ChIP Seq related) in a more systematic way, rather posting bits and pieces of information. I hope you will agree here. :) @ Daniel: It is a great initiative taken by you to build a knowledge blog. I will definitely contribute to it, soon. :)

ADD REPLYlink written 7.0 years ago by Dataminer2.5k
2
gravatar for User 7278
6.8 years ago by
User 727820
User 727820 wrote:

The tutorials for using the ChIP-seq algorithms in Avadis NGS were helpful.

Check out the ChIP-seq tutorials on the Avadis NGS website.

Here is the quick start guide to ChIP-seq:

http://www.avadis-ngs.com/files/docs/Avadis_NGS_ChIP-Seq_Highlights.pdf

ADD COMMENTlink written 6.8 years ago by User 727820
0
gravatar for dnaseiseq
4.5 years ago by
dnaseiseq190
United Kingdom
dnaseiseq190 wrote:

Bailey T, Krajewski P, Ladunga I, Lefebvre C, Li Q, et al. (2013) Practical Guidelines for the Comprehensive Analysis of ChIP-seq Data. PLoS Comput Biol 9(11): e1003326. doi:10.1371/journal.pcbi.1003326

http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1003326

ADD COMMENTlink written 4.5 years ago by dnaseiseq190
0
gravatar for rob234king
4.0 years ago by
rob234king550
UK/Harpenden/Rothamsted Research
rob234king550 wrote:

There's one here:

http://elvis.misc.cranfield.ac.uk/CUBELP2/faces/CHIPSEQ.xhtml

ADD COMMENTlink written 4.0 years ago by rob234king550
0
gravatar for Nowlan Freese
3.2 years ago by
Nowlan Freese820
United States
Nowlan Freese820 wrote:

Here's a video tutorial on ChIP-seq using Galaxy for data analysis and IGB to visualize the results: Video: ChIP-Seq Analysis and Visualization using Galaxy and IGB.

ADD COMMENTlink written 3.2 years ago by Nowlan Freese820
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