Is there any tool or R package to draw 2D representation of protein sequence with predictions marked say disorder prediction, hydropathy, secondary structure prediction as shown in figure below ? (other than mydomains & domplot tool)
Did you get it from pdb.org ? You can ask the authors for an API.
Yes I got it from PDB. I like the idea of this visual representation.
You can use DOG (Domain Graph) tool from http://dog.biocuckoo.org/. It produces domain graph, you can add lines, domain suiting to your needs.
Thanks. I hope it will fulfill my purpose.
If you are not afraid of Perl, Bio::Graphics has all necessary functionality to produce a figure like this.
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