Question: Clustalw-Mpi
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gravatar for ebirckelbaw
6.1 years ago by
ebirckelbaw0 wrote:

Hello, I have a small ubuntu beowulf cluster that I am trying to run clustalW-mpi on so i downloaded the package, compiled and "make" 'd it (which all seemed to work fine) and I downloaded a fasta file of tyrosine sequence off the website and am trying to run the program but when I tell it to run it starts up and then says No alignment! and stops. I am new to this so someone please let me know what to do, thanks!

ubuntu parallel clustalw • 1.7k views
ADD COMMENTlink written 6.1 years ago by ebirckelbaw0

How exactly did you call it and what is the exact error message? Are you sure there was nothing else but 'No alignment'?

ADD REPLYlink written 6.1 years ago by Andreas2.4k

See Parallelize Alignments Using Clustalw-Mpi for more recent alternatives to ClustalW-MPI.

ADD REPLYlink written 6.1 years ago by Hamish3.1k
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