Similar posts • Search »

• How To Modify The Charm R Program For Medip-Chip Dna Methylation Arrays?
  I am using NimbleGen 3x720K CpG Island plus RefSeq promoter DNA methylation arrays which uses a c...
• Identify Differentially Methylated Regions From Medip-Tiling-Array Data
  Has anyone had experience with MeDIP-type protocols and nimbelgen "Mouse DNA Methylation 3x720K C...
• tools for alignment and methylation extraction for MeDIP sequencing
  For methylation study in cancer, we have MeDIP-seq data. What are all tools that we can use for a...
• MeDIP seq data analysis (identify DMR)
  Hello All, I am trying to analyze my MedIP-seq data. I used MethylQA and Macs to call the peaks....
• How to compare methylation array data with methylation MeDip-seq data?
  Hello, I wanted to compare the methylation data generated in a study by both 450k array and MeDi...
• Methylation analysis with MEDIPS
  Hi, I have performed a differential methylation analysis using MEDIPS (R Bioconductor package) u...
• Comparison of MeDIP data with transcriptomics expression data
  Hello All, I wanted to compare the methylation data with expression data. Can I compare the meth...
• Methylation Analysis (Bisulfite sequencing)
  Hello all, Presently I am working on Bisulfite sequencing data for three sample, After primary A...
• MeDip-seq data interpretation + analysis / MEDIPS, MACS2
  Hello everybody, since three weeks i try to make sense out of my (h)medip-seq data (iam an absol...
• How do I find out regions of methylation enrichment using MEDIPS bioconductor package?
  I have a single MEDIP-seq sample and I am only interested in finding out regions of methylation....
• MeDIP seq data analysis
  Hello All, I have got sequencing result back for my MeDIP experiment in fastq format. Is there a ...
• Methylation studies: MEDIPS vs MEDME (what's the difference, which is better?)
  Hi all, I've skimmed the vignettes of the Bioconductor packages 'MEDIPS' and 'MEDME', but I'm no...
• Correlation MeDip-seq data with gene expression data
  Hi everybody, Iam quite new in the field of bioinformatics and epigenetics and right now iam stu...
• Window size for MEDIPS
  Hello Biostars! I've been trying a package called 'MEDIPS' for MeDIP-seq analysis for few days n...
• DNA differential methylation analysis for Illumina Human Methylation 450k and 27K arrays
  I am planning to run differential methylation analysis for a dataset of which some samples are se...
• Mixed Illumina Methylation data from EPIC and 450k
  I am analyzing some mixed methylation array data from EPIC and 450k arrays using Minfi and would ...
• Error when running MEDIPS
  Dear all, I was running MEDIPS. I use the following command lines. But error occurs, which is sh...
• Peak calling on MeDIP data
  Hi All, I have MeDIP data in the form of Bowtie BAM files. I would like to determine the regions ...
• Analysis of variation in methylation patterns based on log-likelihood ratio statistic
  Hi there! I'm trying to get some pointers on where to start on the analysis of my dataset. First,...