Genomegraph (Bioconductor)

Question

[User 7998]

Hi,

I would like to know if the Bioconductor GenomeGraph package is any use for viewing different alternative splicing events and if so, where might I find a tutorial on using Genomegraph for this purpose?

Regards,

Kevin

Answer 1

[User 59]

First of all the package is called GenomeGraphs, and as with all BioConductor has great information in the vignettes.

Even a cursory glance at the PDF you will see that it's possible to show genes and alternative transcripts, it's in the Contents!

You might also be interested in this post from our very own Neil Saunders. You could even look at the paper too

Answer 2

[Malachi Griffith]

Working examples of GenomeGraphs can be found in this thread.

Other options for viewing alternative splicing events can be found in this thread.