Question: Cazy Database Sequences Download
gravatar for elfeu
6.4 years ago by
elfeu40 wrote:

Hello guys!

I'm needing to download the CAZy database sequences. However, I need the number of hits for each sequence. Anyone have any script to automate this I?

thank you

perl database download • 5.5k views
ADD COMMENTlink modified 3.8 years ago by shengwei30 • written 6.4 years ago by elfeu40
gravatar for shengwei
3.8 years ago by
shengwei30 wrote:

I use dbCAN, it's based on CAZy database and regularly updated. You can annotate your protein online, or download the database then do blastp/hmmscan search locally.

ADD COMMENTlink modified 19 months ago • written 3.8 years ago by shengwei30

I found out that dbCAN cannot be accessed recently,and there is nowhere to download CAZymes database anymore,what should I do to deal with that?

Please help. Thanks in advance. :)

ADD REPLYlink written 10 months ago by 7243032230

There is an updated version here:

ADD REPLYlink written 7 months ago by shengwei30
gravatar for Alexander Viborg
5.4 years ago by
Copenhagen, Denmark
Alexander Viborg10 wrote:

Even that your question is old, I'll provide this answer in case that anyone else should be interested in a solution to get all sequences in the CAZy database.

Here you can download a recently up-to-date full copy of the CAZy database:


For your second need, I'm unsure why you'd need the number of redundant sequences?

ADD COMMENTlink modified 4.3 years ago • written 5.4 years ago by Alexander Viborg10
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