Question: Cazy Database Sequences Download
2
gravatar for elfeu
5.5 years ago by
elfeu40
elfeu40 wrote:

Hello guys!

I'm needing to download the CAZy database sequences. However, I need the number of hits for each sequence. Anyone have any script to automate this I?

thank you

perl database download • 4.9k views
ADD COMMENTlink modified 3.0 years ago by shengwei30 • written 5.5 years ago by elfeu40
3
gravatar for shengwei
3.0 years ago by
shengwei30
shengwei30 wrote:

I use dbCAN, it's based on CAZy database and regularly updated. You can annotate your protein online, or download the database then do blastp/hmmscan search locally.

ADD COMMENTlink modified 9 months ago • written 3.0 years ago by shengwei30

I found out that dbCAN cannot be accessed recently,and there is nowhere to download CAZymes database anymore,what should I do to deal with that?

Please help. Thanks in advance. :)

ADD REPLYlink written 1 day ago by 7243032230
1
gravatar for Alexander Viborg
4.5 years ago by
Copenhagen, Denmark
Alexander Viborg10 wrote:

Even that your question is old, I'll provide this answer in case that anyone else should be interested in a solution to get all sequences in the CAZy database.

Here you can download a recently up-to-date full copy of the CAZy database: http://research.ahv.dk/cazy/blast

 

For your second need, I'm unsure why you'd need the number of redundant sequences?

ADD COMMENTlink modified 3.4 years ago • written 4.5 years ago by Alexander Viborg10
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