9.1 years ago by
open all 6 structure in Pymol. then use the "Fit" command between every structure of ITASSER and MODELER structure:
fit (selection), (target-selection)
Not only you can see their similarity visually but also it gives you an RMSD which lower RMSD between two structures shows more similarity at the structure level.
some really good serves also exist which do Multiple Structure Alignment at the same time:
for the second question if you have the Wild type existing then you can also use fit to see the difference between the 6 models and the wild type. again lower RMSD can show better results. but you need to see the bondings as well where important residues are involved.
fit ( mutant and name ca ), ( wildtype and name ca )