Question: (Closed) Sff-Dump Error When Trying To Convert Sra File To Sff
1
gravatar for 2184687-1231-83-
2.9 years ago by
2184687-1231-83-4.5k wrote:

It seems like I cannot use sff-dump on a 454 dataset recently uploaded to NCBI:

ls -l ./SRR190496/SRR190496.sra
-rw-r--r-- 1 avilella ensembl 1633583375 Jun  8 16:59 ./SRR190496/SRR190496.sra

~/sra_toolkit/sratoolkit.2.0.1-centos_linux64/sff-dump -A SRR190496 ./SRR190496/SRR190496.sra
2011-06-09T12:50:31 sff-dump.2.0.6 err: column not found while opening
table within short read archive module - Failed SRR190496
Written 0 spots

Any ideas?
(I emailed info@ncbi.nlm.nih.gov about it on the 9th, no response so far)

sra
ADD COMMENTlink modified 2.7 years ago by Casey Bergman15k • written 2.9 years ago by 2184687-1231-83-4.5k

there was a problem with the upload, it's been fixed on their end, can close the question.

ADD REPLYlink written 2.9 years ago by 2184687-1231-83-4.5k
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