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12.9 years ago
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It seems like I cannot use sff-dump on a 454 dataset recently uploaded to NCBI:
ls -l ./SRR190496/SRR190496.sra -rw-r--r-- 1 avilella ensembl 1633583375 Jun 8 16:59 ./SRR190496/SRR190496.sra ~/sra_toolkit/sratoolkit.2.0.1-centos_linux64/sff-dump -A SRR190496 ./SRR190496/SRR190496.sra 2011-06-09T12:50:31 sff-dump.2.0.6 err: column not found while opening table within short read archive module - Failed SRR190496 Written 0 spots
Any ideas?
(I emailed info@ncbi.nlm.nih.gov about it on the 9th, no response so far)