I have agilent MEdip data and am planning to use MAT algorithm for calling enriched regions. I have seen Cistrome and other publication where they have used MAT on agilent data but I could not find any paper or else where MAT can also be used for Agilent, But for agilent mostly Batman has been used. Has any one used MAT for calling methylation enriched regions. or any reading material if i have missed using MAT fr Agilent MEdip
Thanks