Gencode Annotation In Refgene Format

Question

[Phil S.]

HI there,

i just downloaded the new Gencode.v19 human genome annotation and tried to convert it info refGene format. But somehow I fail. Can someone point to a script or a one-liner doing the conversion.

thanks.

[Phil S.]

FWIW: solved it. Kent tools provides a tool gtfToGenepred. Using this and the command line cut -f 12 genePredFile | paste - genePredFile > refGeneFile does the jobs. thanks for reading...