Question: Retrieval Of Sequence With The Mutation By Biopython
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gravatar for ahmedakhokhar
5.9 years ago by
ahmedakhokhar110
Belgium
ahmedakhokhar110 wrote:

I am new Biopython user, I have the genomic position of a mutation, I like to retrieve its sequence with the base change (mutation), How can I do that?? Thanks ..

bioinformatics biopython • 1.8k views
ADD COMMENTlink modified 3.0 years ago by Biostar ♦♦ 20 • written 5.9 years ago by ahmedakhokhar110

FYI, your question is a bit ambiguous. Do you want the entire chromosome with the change or just the flanking sequence? Also, what have you tried? People will be more likely to help you if they can see that you've put some effort into answering things yourself.

ADD REPLYlink modified 5.9 years ago • written 5.9 years ago by Devon Ryan93k

Thank you, Well I would say I want to retrieve only flanking regions.

ADD REPLYlink written 5.9 years ago by ahmedakhokhar110
1

OK, then what have you tried so far? While I (or someone else) could just post a few lines showing how to do this in biopython, there's no point in doing that if you haven't tried to figure out how to do this yet yourself.

ADD REPLYlink written 5.9 years ago by Devon Ryan93k
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