i was wondering if someone could let point me the direction of the VCF file from 1000 genomes which has from all chromosomes for all samples?
thanks in advance.
You can find the VCF files for phase 1 here:
those are individual chromosome fies, i believe there is one file with data from all chromosomes but i cannot seem to find that.
Or if you only need the sites you can use the wgs file
If you want the genotypes a file which was the whole genome would be so big as to be unmanageable so we only provide files by chromosome
does this file have genotypes for the sites?
There haven't been any "whole genome" VCFs produced by the 1000 Genomes Project since the Pilot phase.
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