Question: How To Design Suitable Library For The Detection Of Alternative Splicing And Fusion Genes By Rna-Seq ?
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gravatar for jack
6.3 years ago by
jack450
jack450 wrote:

Which library design (single end or paired end, short or long read length) would you choose for the detection of alternative splicing and fusion genes by RNA-Seq?

bioinformatics ngs genomic • 1.6k views
ADD COMMENTlink written 6.3 years ago by jack450
1

Generally the longer the reads the better and easier the mappability to the genome is and paired end data is always better than single end due to that the mate pair always improves the mapping and assembling the transcriptome as well.

ADD REPLYlink written 6.3 years ago by Floris Brenk910
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