Question: Megan 5 - How To Extract All Read Assignments To A Dsv
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gravatar for matija.sosic
6.2 years ago by
matija.sosic90
Croatia/Zagreb/Faculty of Electronical Engineering and Computing
matija.sosic90 wrote:

I would like to export assignment of each read to taxon_id (from NCBI tree). When I go to File -> Export -> DSV Format, and then choose format "read-name, taxon-id" I have to select some node otherwise 0 lines are written to file. Also when I collapse subtree, all assignments of a subtree are mapped to the parent node, e.g. Bacteria and real assignments are ignored.

So how do i get real assignments and for all reads? Do I have to uncollapse whole tree and then select all nodes?

• 2.5k views
ADD COMMENTlink modified 6.2 years ago • written 6.2 years ago by matija.sosic90
1

ok, but isn't it the easiest to actually try what you suggest and see if it that does it?

ADD REPLYlink written 6.2 years ago by Istvan Albert ♦♦ 83k
0
gravatar for matija.sosic
6.2 years ago by
matija.sosic90
Croatia/Zagreb/Faculty of Electronical Engineering and Computing
matija.sosic90 wrote:

Select Tree -> uncollapse all and then press ctrl + a to select all nodes. Having all nodes selected, File -> Export -> DSV Format will export all of them.

ADD COMMENTlink written 6.2 years ago by matija.sosic90
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